Full information on isolate 20221107_DIFT226 (id:5934)
Provenance/primary metadata
- id
- 5934
- isolate
- 20221107_DIFT226
- alias
- DIFT226
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2022
- city
- 1000
- country
- Belgium
- continent
- Europe
- state or locality
- Brussels-Capital Region
- travel history
- Syria
- host
- Human
- source
- Skin lesion
- infection or disease
- Skin lesion
- comments
- Refugee
- epidemic cluster
- J
- sender
- Helena Martini
- curator
- Helena Martini, Laboratorium Microbiologie, Universitair Ziekenhuis Brussel, Belgium (E-mail: Helena.Martini@uzbrussel.be)
- update history
- 18 updates show details
- embargo history
- show details
- date entered
- 2024-08-02
- datestamp
- 2026-07-09
Sequence bin
- method
- Illumina
- contigs
- 29
- total length
- 2,475,810 bp
- max length
- 306,174 bp
- mean length
- 85,373 bp
- N50
- 215,972
- L50
- 5
- N90
- 54,927
- L90
- 15
- N95
- 39,174
- L95
- 18
- %GC
- 53.43
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,320
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_18_0_0_7_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL384
- Clonal group
- ClG384
- Genetic cluster
- GC3
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 131 (119 isolates) | SL: 384 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 217 (115 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 131 (119 isolates) | SL: 384 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 217 (115 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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