Full information on isolate H2969682 (id:5839)
Projects
This isolate is a member of the following project:
- C. ramonii and C. ulcerans, Canada
- Corynebacterium ramonii and C. ulcerans isolates from Vancouver, Canada. Nanopore R.10.4.1 (autotag). Published in: Lowe et al Emerg Inf Dis, 2025 (https://pubmed.ncbi.nlm.nih.gov/39773277/)
Provenance/primary metadata
- id
- 5839
- isolate
- H2969682
- species
- C. ulcerans
- isolation year
- 2023
- city
- Vancouver
- country
- Canada
- continent
- North America
- travel history
- Unknown
- host
- Human
- comments
- Nanopore R10
- sender
- Chiara Crestani
- curator
- Chiara Crestani, Pasteur Institute, France (E-mail: chiara.crestani@pasteur.fr)
- update history
- 5 updates show details
- embargo history
- show details
- date entered
- 2024-06-25
- datestamp
- 2025-04-01
Sequence bin
- method
- Oxford Nanopore
- contigs
- 2
- total length
- 2,717,723 bp
- max length
- 2,707,670 bp
- mean length
- 1,358,862 bp
- N50
- 2,707,670
- L50
- 1
- N90
- 2,707,670
- L90
- 1
- N95
- 2,707,670
- L95
- 1
- %GC
- 53.38
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,583
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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