Full information on isolate TDC0007 (id:5824)
Provenance/primary metadata
- id
- 5824
- isolate
- TDC0007
- species
- C. diphtheriae
- isolation year
- 2023
- city
- Yao
- country
- Chad
- continent
- Africa
- travel history
- None
- host
- Human
- source
- Respiratory
- infection or disease
- Upper RTI
- other source info
- Pharynx
- sender
- Sylvain Brisse, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 1318 updates show details
- date entered
- 2024-06-21
- datestamp
- 2024-06-21
Sequence bin
- contigs
- 39
- total length
- 2,408,699 bp
- max length
- 306,957 bp
- mean length
- 61,762 bp
- N50
- 142,671
- L50
- 6
- N90
- 47,172
- L90
- 16
- N95
- 25,213
- L95
- 19
- %GC
- 53.44
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,311
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_18_0_0_8_0_0_0_0
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 131 (108 isolates) | SL: 384 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 217 (106 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 131 (108 isolates) | SL: 384 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 217 (106 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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