Home About Us Contact What's New
Home>Organism>Corynebacterium cgMLST>Isolate information
Help

Full information on isolate CIP107544 (id:563)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
SL453 study in 2022
See Arcari et al. Microbial Genomics 2023 (IDs 2315 and 2336 were added after publication)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
563
isolate
CIP107544
species
C. diphtheriae
biovar
Mitis
tox gene PCR
Negative
isolation year
1963
city
Neamt
country
Romania
continent
Europe
travel history
Not documented
host
Human
accession number
ERS4330808
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
17 updates show details
date entered
2018-02-20
datestamp
2025-07-18

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
36
total length
2,487,339 bp
max length
325,427 bp
mean length
69,093 bp
N50
178,248
L50
5
N90
53,065
L90
14
N95
20,640
L95
19
%GC
53.57
Ns
0
gaps
0
loci tagged
1,389

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_165_8_0_4_0_1_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL40
Clonal group
ClG40
Genetic cluster
GC60

Show all thresholds

PrefixThresholdMatching isolates
0_0_165_8_0_482
0_0_165_8_0_4_042
0_0_165_8_0_4_0_121
0_0_165_8_0_4_0_1_011
0_0_165_8_0_4_0_1_0_001
012202380
0_010352162
0_0_16550035
0_0_165_85510
0_0_165_8_0258
0_0_165_8_0_482
0_0_165_8_0_4_042
0_0_165_8_0_4_0_121
0_0_165_8_0_4_0_1_011
0_0_165_8_0_4_0_1_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
Genomic_clustercgMLSTSingle-linkage25experimental147 (7 isolates)
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
Genomic_clustercgMLSTSingle-linkage25experimental147 (7 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: