Home About Us Contact What's New

Home>Organism>Corynebacterium cgMLST>Isolate information

Full information on isolate c21 (id:56)

Projects

This isolate is a member of the following projects:

cgMLST set-up study: Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id: 56
isolate: c21
alias: ASM188990v1
species: C. diphtheriae
isolation year: 1981
country: Malaysia
continent: Asia
travel history: Not documented
host: Human
accession number: GCA_001889905.1
epidemic cluster: cryptic_8
sender: Melody Dazas, Institut Pasteur
curator: Auto Tagger
update history: 1323 updates show details
embargo history: show details
date entered: 2017-02-10
datestamp: 2025-07-18

Publications (2)

Ahmad N, Hii SY, Mohd Khalid MK, Abd Wahab MA, Hashim R, Tang SN, Liow YL, Hamzah H, Dahalan NA, Seradja V (2017). First Draft Genome Sequences of Malaysian Clinical Isolates of Corynebacterium diphtheriae. Genome Announc 5:
Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method: Unknown
contigs: 40
total length: 2,500,797 bp
max length: 324,563 bp
mean length: 62,520 bp
N50: 103,815
L50: 6
N90: 49,883
L90: 19
N95: 29,306
L95: 22
%GC: 53.57
Ns: 0
gaps: 0
loci tagged: 1,401

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme: cgMLST
LIN code: 0_0_206_1_0_0_2_0_0_0
Species: C. diphtheriae
Lineage: 0_0
Sublineage: SL452
Clonal group: ClG452
Genetic cluster: GC82

Show all thresholds Hide larger thresholds

Prefix	Threshold	Matching isolates
0_0_206_1_0_0	8	4
0_0_206_1_0_0_2	4	1
0_0_206_1_0_0_2_0	2	1
0_0_206_1_0_0_2_0_0	1	1
0_0_206_1_0_0_2_0_0_0	0	1
0	1220	2380
0_0	1035	2162
0_0_206	500	4
0_0_206_1	55	4
0_0_206_1_0	25	4
0_0_206_1_0_0	8	4
0_0_206_1_0_0_2	4	1
0_0_206_1_0_0_2_0	2	1
0_0_206_1_0_0_2_0_0	1	1
0_0_206_1_0_0_2_0_0_0	0	1

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	22 (4 isolates)	SL: 452
Genomic_cluster	cgMLST	Single-linkage	25	experimental	22 (4 isolates)
Sublineage	cgMLST	Single-linkage	500	experimental	22 (4 isolates)	SL: 452
Genomic_cluster	cgMLST	Single-linkage	25	experimental	22 (4 isolates)

Schemes and loci

All loci

Navigate and select schemes within tree to display allele designations

Tools

Export:

Analysis: