Full information on isolate 1849982 (id:5484)
Projects
This isolate is a member of the following project:
- 2023_EuropeanWideReemergence_followup
- EU isolates 2023 (Hoefer et al.)
Provenance/primary metadata
- id
- 5484
- isolate
- 1849982
- alias
- UK74
- species
- C. diphtheriae
- biovar
- Unknown
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2023
- country
- UK
- continent
- Europe
- travel history
- UNK
- host
- human
- accession number
- ERR13699342
- sender
- Josh D'Aeth, UKHSA, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- embargo history
- show details
- date entered
- 2024-04-15
- datestamp
- 2025-07-18
Sequence bin
- method
- Illumina
- contigs
- 47
- total length
- 2,469,196 bp
- max length
- 275,225 bp
- mean length
- 52,537 bp
- N50
- 122,586
- L50
- 7
- N90
- 32,406
- L90
- 20
- N95
- 19,714
- L95
- 25
- %GC
- 53.59
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,306
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_85_1_0_0_0_0_8_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL574
- Clonal group
- ClG574
- Genetic cluster
- GC1
Schemes and loci
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Tools
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