Full information on isolate D13.05N (id:5459)
Provenance/primary metadata
- id
- 5459
- isolate
- D13.05N
- species
- C. diphtheriae
- tox gene PCR
- Positive
- isolation year
- 2005
- city
- Natal
- country
- Brazil
- continent
- South America
- state or locality
- RN
- travel history
- Unknown
- host
- Human
- infection or disease
- Diphtheria
- sender
- Carlos Camargo, Instituto Adolfo Lutz, Brazil
- curator
- Virginie Passet, Institut Pasteur, France (E-mail: virginie.passet@pasteur.fr)
- update history
- 2 updates show details
- date entered
- 2024-04-02
- datestamp
- 2024-04-02
Sequence bin
- method
- Ion Torrent
- contigs
- 70
- total length
- 2,480,060 bp
- max length
- 404,544 bp
- mean length
- 35,430 bp
- N50
- 136,020
- L50
- 5
- N90
- 42,636
- L90
- 17
- N95
- 23,409
- L95
- 21
- %GC
- 53.54
- Ns
- 0
- gaps
- 0
- loci tagged
- 7
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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