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Full information on isolate FRC0551 (id:540)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
French Guiana 2016-2021 study
Isolates included in the French Guiana 2016-2021 study (Gaillet et al., Emerg Inf Dis, 2024, https://pubmed.ncbi.nlm.nih.gov/39043387/)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
540
isolate
FRC0551
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Negative
isolation year
2017
country
French Guiana
continent
South America
state or locality
French Guiana
travel history
Not documented
host
Human
source
Cutaneous
infection or disease
Not documented
accession number
ERS4330991
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
28 updates show details
date entered
2018-02-20
datestamp
2025-07-17

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
24
total length
2,421,381 bp
max length
480,094 bp
mean length
100,891 bp
N50
436,750
L50
3
N90
73,696
L90
9
N95
25,360
L95
12
%GC
53.53
Ns
0
gaps
0
loci tagged
1,367

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_24_1_0_0_0_1_0_0_0
Species
C. diphtheriae
Lineage
0_24
Sublineage
SL427
Clonal group
ClG427
Genetic cluster
GC110

Show all thresholds

PrefixThresholdMatching isolates
0_24_1_0_0_083
0_24_1_0_0_0_142
0_24_1_0_0_0_1_022
0_24_1_0_0_0_1_0_012
0_24_1_0_0_0_1_0_0_002
012202380
0_2410355
0_24_15003
0_24_1_0553
0_24_1_0_0253
0_24_1_0_0_083
0_24_1_0_0_0_142
0_24_1_0_0_0_1_022
0_24_1_0_0_0_1_0_012
0_24_1_0_0_0_1_0_0_002

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental208 (3 isolates)
SL: 427
Genomic_clustercgMLSTSingle-linkage25experimental351 (3 isolates)
SublineagecgMLSTSingle-linkage500experimental208 (3 isolates)
SL: 427
Genomic_clustercgMLSTSingle-linkage25experimental351 (3 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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