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Full information on isolate FRC0534 (id:528)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
New Caledonia 2015-2019 study
Isolates included in the New Caledonia study (Tessier et al., 2023, Microbiol Spectr, https://pubmed.ncbi.nlm.nih.gov/37042786/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
528
isolate
FRC0534
species
C. diphtheriae
biovar
Mitis
tox gene PCR
Negative
isolation year
2017
country
New Caledonia
continent
Oceania
state or locality
New Caledonia
travel history
Not documented
host
Human
source
Cutaneous
infection or disease
Not documented
accession number
ERS4330982
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
22 updates show details
date entered
2018-02-20
datestamp
2025-07-18

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
47
total length
2,478,256 bp
max length
309,355 bp
mean length
52,729 bp
N50
168,674
L50
6
N90
32,958
L90
18
N95
22,753
L95
23
%GC
53.77
Ns
0
gaps
0
loci tagged
1,394

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_173_0_0_1_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL86
Clonal group
ClG86
Genetic cluster
GC102

Show all thresholds

PrefixThresholdMatching isolates
0_0_173_0_0_181
0_0_173_0_0_1_041
0_0_173_0_0_1_0_021
0_0_173_0_0_1_0_0_011
0_0_173_0_0_1_0_0_0_001
012202380
0_010352162
0_0_1735008
0_0_173_0554
0_0_173_0_0254
0_0_173_0_0_181
0_0_173_0_0_1_041
0_0_173_0_0_1_0_021
0_0_173_0_0_1_0_0_011
0_0_173_0_0_1_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental56 (8 isolates)
SL: 10007
Genomic_clustercgMLSTSingle-linkage25experimental75 (4 isolates)
SublineagecgMLSTSingle-linkage500experimental56 (8 isolates)
SL: 10007
Genomic_clustercgMLSTSingle-linkage25experimental75 (4 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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