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Full information on isolate FRC0529 (id:526)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
French Guiana 2016-2021 study
Isolates included in the French Guiana 2016-2021 study (Gaillet et al., Emerg Inf Dis, 2024, https://pubmed.ncbi.nlm.nih.gov/39043387/)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
526
isolate
FRC0529
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Negative
isolation year
2017
country
French Guiana
continent
South America
state or locality
French Guiana
travel history
Not documented
host
Human
source
respiratory
infection or disease
Lower RTI
accession number
ERS4330980
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
30 updates show details
date entered
2018-02-20
datestamp
2025-07-17

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
37
total length
2,396,407 bp
max length
425,660 bp
mean length
64,768 bp
N50
374,031
L50
3
N90
48,357
L90
12
N95
25,074
L95
16
%GC
53.44
Ns
0
gaps
0
loci tagged
1,375

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_40_2_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL128
Clonal group
ClG128
Genetic cluster
GC54

Show all thresholds

PrefixThresholdMatching isolates
0_0_40_2_0_082
0_0_40_2_0_0_041
0_0_40_2_0_0_0_021
0_0_40_2_0_0_0_0_011
0_0_40_2_0_0_0_0_0_001
012202380
0_010352162
0_0_4050010
0_0_40_2558
0_0_40_2_0258
0_0_40_2_0_082
0_0_40_2_0_0_041
0_0_40_2_0_0_0_021
0_0_40_2_0_0_0_0_011
0_0_40_2_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental17 (10 isolates)
SL: 128
Genomic_clustercgMLSTSingle-linkage25experimental341 (8 isolates)
SublineagecgMLSTSingle-linkage500experimental17 (10 isolates)
SL: 128
Genomic_clustercgMLSTSingle-linkage25experimental341 (8 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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