Full information on isolate FRC0190T_P2M-2024 (id:5257)
Projects
This isolate is a member of the following project:
- Corynebacterium_Nanopore_R10_2025
- Benchmarking Nanopore R10 sequencing vs Illumina for cgMLST typing
Provenance/primary metadata
- id
- 5257
- isolate
- FRC0190T_P2M-2024
- species
- C. rouxii
- biovar
- Belfanti
- tox gene PCR
- Negative
- isolation year
- 2013
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- Cutaneous and soft tissue
- infection or disease
- Cutaneous and soft tissue infection
- other source info
- Ulcer left foot
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 4 updates show details
- embargo history
- show details
- date entered
- 2024-02-27
- datestamp
- 2025-04-30
Sequence bin
- method
- Unknown
- contigs
- 28
- total length
- 2,425,421 bp
- max length
- 615,141 bp
- mean length
- 86,623 bp
- N50
- 245,449
- L50
- 3
- N90
- 86,846
- L90
- 10
- N95
- 31,853
- L95
- 12
- %GC
- 53.24
- Ns
- 29
- gaps
- 22
- loci tagged
- 1,251
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 1_0_0_8_0_0_0_0_1_0
- Species
- C. rouxii
- Lineage
- 1_0
- Sublineage
- SL537
- Clonal group
- ClG10051
- Genetic cluster
- GC12
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 134 (35 isolates) | SL: 181 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 250 (26 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 134 (35 isolates) | SL: 181 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 250 (26 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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