Full information on isolate FRC0497 (id:503)
Projects
Provenance/primary metadata
- id
- 503
- isolate
- FRC0497
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2017
- country
- New Caledonia
- continent
- Oceania
- state or locality
- New Caledonia
- travel history
- Not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- accession number
- ERS4330969
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 28 updates show details
- date entered
- 2018-02-20
- datestamp
- 2025-07-18
Publication (1)
- Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107
Sequence bin
- method
- Illumina
- contigs
- 47
- total length
- 2,439,287 bp
- max length
- 360,570 bp
- mean length
- 51,900 bp
- N50
- 140,034
- L50
- 6
- N90
- 25,650
- L90
- 22
- N95
- 18,134
- L95
- 27
- %GC
- 53.62
- Ns
- 126
- gaps
- 13
- loci tagged
- 1,357
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_174_0_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL522
- Clonal group
- ClG522
- Genetic cluster
- GC289
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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