Full information on isolate FRC0497 (id:503)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
New Caledonia 2015-2019 study
Isolates included in the New Caledonia study (Tessier et al., 2023, Microbiol Spectr, https://pubmed.ncbi.nlm.nih.gov/37042786/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
503
isolate
FRC0497
species
C. diphtheriae
biovar
Mitis
tox gene PCR
Negative
isolation year
2017
country
New Caledonia
continent
Oceania
state or locality
New Caledonia
travel history
Not documented
host
Human
source
Cutaneous
infection or disease
Not documented
accession number
ERS4330969
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
28 updates show details
date entered
2018-02-20
datestamp
2025-07-18

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
47
total length
2,439,287 bp
max length
360,570 bp
mean length
51,900 bp
N50
140,034
L50
6
N90
25,650
L90
22
N95
18,134
L95
27
%GC
53.62
Ns
126
gaps
13
loci tagged
1,357

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_174_0_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL522
Clonal group
ClG522
Genetic cluster
GC289

Show all thresholds

PrefixThresholdMatching isolates
0_0_174_0_0_081
0_0_174_0_0_0_041
0_0_174_0_0_0_0_021
0_0_174_0_0_0_0_0_011
0_0_174_0_0_0_0_0_0_001
012202380
0_010352162
0_0_1745001
0_0_174_0551
0_0_174_0_0251
0_0_174_0_0_081
0_0_174_0_0_0_041
0_0_174_0_0_0_0_021
0_0_174_0_0_0_0_0_011
0_0_174_0_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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Analysis: