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Full information on isolate FRC0492 (id:499)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
New Caledonia 2015-2019 study
Isolates included in the New Caledonia study (Tessier et al., 2023, Microbiol Spectr, https://pubmed.ncbi.nlm.nih.gov/37042786/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
499
isolate
FRC0492
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Negative
isolation year
2017
country
New Caledonia
continent
Oceania
state or locality
New Caledonia
travel history
Not documented
host
Human
source
Cutaneous
infection or disease
Not documented
accession number
ERS4330967
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
20 updates show details
date entered
2018-02-20
datestamp
2025-07-17

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
42
total length
2,485,263 bp
max length
419,738 bp
mean length
59,173 bp
N50
129,969
L50
6
N90
36,326
L90
21
N95
26,162
L95
25
%GC
53.54
Ns
140
gaps
14
loci tagged
1,400

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_47_0_0_0_7_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL416
Clonal group
ClG416
Genetic cluster
GC14

Show all thresholds

PrefixThresholdMatching isolates
0_0_47_0_0_0826
0_0_47_0_0_0_741
0_0_47_0_0_0_7_021
0_0_47_0_0_0_7_0_011
0_0_47_0_0_0_7_0_0_001
012202380
0_010352162
0_0_4750027
0_0_47_05526
0_0_47_0_02526
0_0_47_0_0_0826
0_0_47_0_0_0_741
0_0_47_0_0_0_7_021
0_0_47_0_0_0_7_0_011
0_0_47_0_0_0_7_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental82 (27 isolates)
SL: 416
Genomic_clustercgMLSTSingle-linkage25experimental108 (26 isolates)
SublineagecgMLSTSingle-linkage500experimental82 (27 isolates)
SL: 416
Genomic_clustercgMLSTSingle-linkage25experimental108 (26 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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