Full information on isolate FRC0485 (id:497)
Projects
Provenance/primary metadata
- id
- 497
- isolate
- FRC0485
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2017
- country
- New Caledonia
- continent
- Oceania
- state or locality
- New Caledonia
- travel history
- Vanuatu
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- accession number
- ERS4330965
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 29 updates show details
- date entered
- 2018-02-20
- datestamp
- 2025-07-18
Publication (1)
- Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107
Sequence bin
- method
- Illumina
- contigs
- 31
- total length
- 2,453,834 bp
- max length
- 432,254 bp
- mean length
- 79,156 bp
- N50
- 223,413
- L50
- 4
- N90
- 40,653
- L90
- 16
- N95
- 30,079
- L95
- 19
- %GC
- 53.70
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,339
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_220_1_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL380
- Clonal group
- ClG10233
- Genetic cluster
- GC801
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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