Full information on isolate FRC0485 (id:497)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
New Caledonia 2015-2019 study
Isolates included in the New Caledonia study (Tessier et al., 2023, Microbiol Spectr, https://pubmed.ncbi.nlm.nih.gov/37042786/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
497
isolate
FRC0485
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Positive
tox production Elek
Positive
isolation year
2017
country
New Caledonia
continent
Oceania
state or locality
New Caledonia
travel history
Vanuatu
host
Human
source
Cutaneous
infection or disease
Not documented
accession number
ERS4330965
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
29 updates show details
date entered
2018-02-20
datestamp
2025-07-18

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
31
total length
2,453,834 bp
max length
432,254 bp
mean length
79,156 bp
N50
223,413
L50
4
N90
40,653
L90
16
N95
30,079
L95
19
%GC
53.70
Ns
0
gaps
0
loci tagged
1,339

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_220_1_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL380
Clonal group
ClG10233
Genetic cluster
GC801

Show all thresholds

PrefixThresholdMatching isolates
0_0_220_1_0_081
0_0_220_1_0_0_041
0_0_220_1_0_0_0_021
0_0_220_1_0_0_0_0_011
0_0_220_1_0_0_0_0_0_001
012202380
0_010352162
0_0_2205002
0_0_220_1551
0_0_220_1_0251
0_0_220_1_0_081
0_0_220_1_0_0_041
0_0_220_1_0_0_0_021
0_0_220_1_0_0_0_0_011
0_0_220_1_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental192 (2 isolates)
SL: 380
SublineagecgMLSTSingle-linkage500experimental192 (2 isolates)
SL: 380
Genomic_clustercgMLSTSingle-linkage25experimental321 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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