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Full information on isolate FRC0469 (id:484)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
New Caledonia 2015-2019 study
Isolates included in the New Caledonia study (Tessier et al., 2023, Microbiol Spectr, https://pubmed.ncbi.nlm.nih.gov/37042786/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
484
isolate
FRC0469
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Negative
isolation year
2016
country
New Caledonia
continent
Oceania
state or locality
New Caledonia
travel history
Not documented
host
Human
source
Cutaneous
infection or disease
Not documented
accession number
ERS4330954
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
26 updates show details
date entered
2018-02-20
datestamp
2025-07-17

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
42
total length
2,423,535 bp
max length
355,382 bp
mean length
57,704 bp
N50
102,025
L50
7
N90
55,790
L90
19
N95
22,132
L95
24
%GC
53.36
Ns
0
gaps
0
loci tagged
1,376

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_30_0_1_1_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL228
Clonal group
ClG228
Genetic cluster
GC31

Show all thresholds

PrefixThresholdMatching isolates
0_0_30_0_1_181
0_0_30_0_1_1_041
0_0_30_0_1_1_0_021
0_0_30_0_1_1_0_0_011
0_0_30_0_1_1_0_0_0_001
012202380
0_010352162
0_0_3050044
0_0_30_05532
0_0_30_0_12514
0_0_30_0_1_181
0_0_30_0_1_1_041
0_0_30_0_1_1_0_021
0_0_30_0_1_1_0_0_011
0_0_30_0_1_1_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental43 (43 isolates)
SL: 228
Genomic_clustercgMLSTSingle-linkage25experimental312 (15 isolates)
SublineagecgMLSTSingle-linkage500experimental43 (43 isolates)
SL: 228
Genomic_clustercgMLSTSingle-linkage25experimental312 (15 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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