Full information on isolate FRC2020 (id:4714)
Projects
This isolate is a member of the following project:
- 2023_EuropeanWideReemergence_followup
- EU isolates 2023 (Hoefer et al.)
Provenance/primary metadata
- id
- 4714
- isolate
- FRC2020
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2023
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Arabie-Saoudite
- host
- Human
- source
- Cutaneous and soft tissue
- infection or disease
- Cutaneous and soft tissue infection
- other source info
- Wound
- accession number
- ERR13801628
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 7 updates show details
- embargo history
- show details
- date entered
- 2023-11-09
- datestamp
- 2025-04-30
Sequence bin
- method
- Unknown
- contigs
- 65
- total length
- 2,490,022 bp
- max length
- 233,472 bp
- mean length
- 38,309 bp
- N50
- 131,592
- L50
- 7
- N90
- 27,371
- L90
- 23
- N95
- 17,826
- L95
- 28
- %GC
- 53.63
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,312
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_96_0_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL947
- Clonal group
- ClG947
- Genetic cluster
- GC551
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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