Full information on isolate FRC2000 (id:4697)
Projects
This isolate is a member of the following project:
- 2023_EuropeanWideReemergence_followup
- EU isolates 2023 (Hoefer et al.)
Provenance/primary metadata
- id
- 4697
- isolate
- FRC2000
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2023
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Mali
- host
- Human
- source
- Cutaneous and soft tissue
- infection or disease
- Cutaneous and soft tissue infection
- other source info
- Wound
- accession number
- ERS17308208
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 6 updates show details
- embargo history
- show details
- date entered
- 2023-10-24
- datestamp
- 2025-04-30
Sequence bin
- method
- Unknown
- contigs
- 36
- total length
- 2,485,620 bp
- max length
- 489,268 bp
- mean length
- 69,045 bp
- N50
- 151,102
- L50
- 5
- N90
- 49,067
- L90
- 17
- N95
- 27,709
- L95
- 20
- %GC
- 53.63
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,311
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_97_4_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL183
- Clonal group
- ClG10050
- Genetic cluster
- GC410
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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