Full information on isolate KL2175 (id:4607)
Provenance/primary metadata
- id
- 4607
- isolate
- KL2175
- species
- C. ramonii
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2022
- country
- Germany
- continent
- Europe
- travel history
- Unknown
- host
- cat
- sender
- Alexandra Dangel, Bavarian Health and Food Safety Authority (LGL)
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2023-06-30
- datestamp
- 2023-11-16
Sequence bin
- method
- Illumina
- contigs
- 35
- total length
- 2,535,718 bp
- max length
- 786,119 bp
- mean length
- 72,450 bp
- N50
- 523,129
- L50
- 2
- N90
- 218,118
- L90
- 5
- N95
- 62,319
- L95
- 6
- %GC
- 53.58
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,618
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 20 (4 isolates) | CG: 344 |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 12 (4 isolates) | SL: 344 |
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 20 (4 isolates) | CG: 344 |
| Genomic_cluster_ulcerans | cgMLST_ulcerans | Single-linkage | 25 | experimental | 370 (1 isolate) | |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 12 (4 isolates) | SL: 344 |
Schemes and loci
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