Full information on isolate FRC1884 (id:4415)
Projects
This isolate is a member of the following project:
- 2023_EuropeanWideReemergence_followup
- EU isolates 2023 (Hoefer et al.)
Provenance/primary metadata
- id
- 4415
- isolate
- FRC1884
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2023
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- None
- host
- Human
- source
- Bone and joint
- infection or disease
- Bone and joint infection
- other source info
- Tibia
- accession number
- ERR13801624
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- embargo history
- show details
- date entered
- 2023-05-11
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 57
- total length
- 2,390,653 bp
- max length
- 319,021 bp
- mean length
- 41,942 bp
- N50
- 105,731
- L50
- 7
- N90
- 23,770
- L90
- 26
- N95
- 19,501
- L95
- 31
- %GC
- 53.37
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,313
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_57_11_0_0_0_1_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL395
- Clonal group
- ClG10038
- Genetic cluster
- GC74
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 31 (94 isolates) | SL: 395 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 814 (4 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 31 (94 isolates) | SL: 395 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 814 (4 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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