Full information on isolate PW-8 CN2000 A 2 (id:44)
Provenance/primary metadata
- id
- 44
- isolate
- PW-8 CN2000 A 2
- species
- C. diphtheriae
- isolation year
- 2009
- country
- India
- continent
- Asia
- travel history
- Not documented
- host
- Human
- comments
- Microbe sample from Corynebacterium diphtheriae PW-8 CN2000 A 2 -09 (II) Working culture (C.diphtheriae.WC)
- accession number
- SAMN10739869
- sender
- Julien Guglielmini, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 8 updates show details
- date entered
- 2020-01-06
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 56
- total length
- 2,494,713 bp
- max length
- 244,311 bp
- mean length
- 44,549 bp
- N50
- 105,435
- L50
- 8
- N90
- 35,505
- L90
- 21
- N95
- 22,791
- L95
- 26
- %GC
- 53.68
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,294
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_196_0_0_2_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL44
- Clonal group
- ClG44
- Genetic cluster
- GC63
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 20 (6 isolates) | SL: 44 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 20 (6 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 20 (6 isolates) | SL: 44 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 20 (6 isolates) |
Schemes and loci
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