Full information on isolate CD197 (id:3851)
Projects
This isolate is a member of the following project:
- 2022_EuropeanWideReemergence_collection
- Collection of the Hoefer et al. study on a large-scale Corynebacterium diphtheriae outbreak among migrant populations in Europe in 2022
Provenance/primary metadata
- id
- 3851
- isolate
- CD197
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2022
- city
- Pisa
- country
- Italy
- continent
- Europe
- travel history
- Libya, Sicily, Tuscany
- host
- Human
- source
- throat
- infection or disease
- Respiratory with no membrane, cutaneous
- sender
- Monica Monaco, Istituto Superiore di Sanità -Rome-Italy
- curator
- Auto Tagger
- update history
- 7 updates show details
- embargo history
- show details
- date entered
- 2023-06-27
- datestamp
- 2025-07-17
Sequence bin
- method
- Illumina
- contigs
- 64
- total length
- 2,446,959 bp
- max length
- 171,225 bp
- mean length
- 38,234 bp
- N50
- 103,744
- L50
- 10
- N90
- 36,796
- L90
- 24
- N95
- 25,029
- L95
- 29
- %GC
- 53.52
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,297
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_151_0_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL916
- Clonal group
- ClG916
- Genetic cluster
- GC534
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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Analysis: