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Full information on isolate ISS4749 (id:35)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
35
isolate
ISS4749
species
C. diphtheriae
tox gene PCR
Negative
isolation year
2000
city
Roma
country
Italy
continent
Europe
travel history
Not documented
host
Human
infection or disease
Pharyngitis/tonsilitis
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
1332 updates show details
embargo history
show details
date entered
2017-02-07
datestamp
2025-07-17

Publication (1)

  • Sangal V, Blom J, Sutcliffe IC, von Hunolstein C, Burkovski A, Hoskisson PA (2015). Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome. BMC Genomics 16:765

Sequence bin

method
Unknown
contigs
40
total length
2,366,484 bp
max length
410,973 bp
mean length
59,163 bp
N50
145,623
L50
5
N90
38,806
L90
16
N95
29,481
L95
19
%GC
53.45
Ns
0
gaps
0
loci tagged
1,401

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_19_4_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL32
Clonal group
ClG32
Genetic cluster
GC770

Show all thresholds

PrefixThresholdMatching isolates
0_0_19_4_0_081
0_0_19_4_0_0_041
0_0_19_4_0_0_0_021
0_0_19_4_0_0_0_0_011
0_0_19_4_0_0_0_0_0_001
012202380
0_010352162
0_0_19500102
0_0_19_45553
0_0_19_4_0251
0_0_19_4_0_081
0_0_19_4_0_0_041
0_0_19_4_0_0_0_021
0_0_19_4_0_0_0_0_011
0_0_19_4_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental23 (30 isolates)
SL: 32
SublineagecgMLSTSingle-linkage500experimental23 (30 isolates)
SL: 32
Genomic_clustercgMLSTSingle-linkage25experimental28 (1 isolate)

Schemes and loci

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Tools

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