Full information on isolate ISS4746 (id:34)
Projects
Provenance/primary metadata
- id
- 34
- isolate
- ISS4746
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 2000
- city
- Roma
- country
- Italy
- continent
- Europe
- travel history
- Not documented
- host
- Human
- infection or disease
- Pharyngitis/tonsilitis
- accession number
- JAQP01000000
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1332 updates show details
- embargo history
- show details
- date entered
- 2017-02-07
- datestamp
- 2025-07-17
Publications (2)
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Sangal V, Blom J, Sutcliffe IC, von Hunolstein C, Burkovski A, Hoskisson PA (2015). Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome. BMC Genomics 16:765
Sequence bin
- method
- Unknown
- contigs
- 53
- total length
- 2,379,713 bp
- max length
- 238,498 bp
- mean length
- 44,901 bp
- N50
- 119,602
- L50
- 7
- N90
- 31,394
- L90
- 21
- N95
- 25,145
- L95
- 25
- %GC
- 53.46
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,401
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_1_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG10265
- Genetic cluster
- GC567
Similar isolates (determined by classification schemes)
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Schemes and loci
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