Full information on isolate FRC1743 (id:3377)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 3377
- isolate
- FRC1743
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- None
- host
- Human
- source
- Cutaneous and soft tissue
- infection or disease
- Cutaneous and soft tissue infection
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- embargo history
- show details
- date entered
- 2022-11-10
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 41
- total length
- 2,370,014 bp
- max length
- 422,711 bp
- mean length
- 57,806 bp
- N50
- 147,414
- L50
- 5
- N90
- 37,355
- L90
- 17
- N95
- 22,820
- L95
- 22
- %GC
- 53.44
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,304
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_4_1_4_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG32
- Genetic cluster
- GC28
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 23 (30 isolates) | SL: 32 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 23 (17 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 23 (30 isolates) | SL: 32 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 23 (17 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: