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Full information on isolate CIP100275 (id:328)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
328
isolate
CIP100275
species
C. diphtheriae
biovar
Mitis
isolation year
1983
city
Paris
country
France
continent
Europe
travel history
Not documented
host
Human
source
Respiratory
accession number
ERS4330764
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
21 updates show details
date entered
2018-02-20
datestamp
2025-07-17

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
28
total length
2,375,953 bp
max length
374,186 bp
mean length
84,856 bp
N50
256,515
L50
4
N90
53,316
L90
14
N95
25,659
L95
17
%GC
53.45
Ns
50
gaps
5
loci tagged
1,377

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_42_0_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL80
Clonal group
ClG80
Genetic cluster
GC928

Show all thresholds

PrefixThresholdMatching isolates
0_0_42_0_0_081
0_0_42_0_0_0_041
0_0_42_0_0_0_0_021
0_0_42_0_0_0_0_0_011
0_0_42_0_0_0_0_0_0_001
012202380
0_010352162
0_0_425004
0_0_42_0554
0_0_42_0_0251
0_0_42_0_0_081
0_0_42_0_0_0_041
0_0_42_0_0_0_0_021
0_0_42_0_0_0_0_0_011
0_0_42_0_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental19 (4 isolates)
SL: 508
SublineagecgMLSTSingle-linkage500experimental19 (4 isolates)
SL: 508
Genomic_clustercgMLSTSingle-linkage25experimental193 (1 isolate)

Schemes and loci

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Tools

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