Full information on isolate ISS4060 (id:32)
Projects
Provenance/primary metadata
- id
- 32
- isolate
- ISS4060
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 1999
- city
- Roma
- country
- Italy
- continent
- Europe
- travel history
- Not documented
- host
- Human
- infection or disease
- Pharyngitis/tonsilitis
- accession number
- JAQN00000000
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1335 updates show details
- embargo history
- show details
- date entered
- 2017-02-07
- datestamp
- 2025-07-18
Publications (2)
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Sangal V, Blom J, Sutcliffe IC, von Hunolstein C, Burkovski A, Hoskisson PA (2015). Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome. BMC Genomics 16:765
Sequence bin
- method
- Unknown
- contigs
- 47
- total length
- 2,395,664 bp
- max length
- 400,294 bp
- mean length
- 50,972 bp
- N50
- 102,641
- L50
- 7
- N90
- 43,396
- L90
- 20
- N95
- 21,394
- L95
- 24
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,378
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_8_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG10194
- Genetic cluster
- GC824
Similar isolates (determined by classification schemes)
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Schemes and loci
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