Full information on isolate CIP107506 (id:316)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
316
isolate
CIP107506
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Negative
isolation year
1995
city
Baltik
country
Russia
continent
Asia
travel history
Not documented
host
Human
accession number
ERS4330778
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
17 updates show details
date entered
2018-02-20
datestamp
2025-07-17

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
52
total length
2,488,114 bp
max length
352,599 bp
mean length
47,849 bp
N50
103,935
L50
7
N90
27,936
L90
25
N95
18,361
L95
30
%GC
53.48
Ns
10
gaps
1
loci tagged
1,392

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_19_7_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL32
Clonal group
ClG146
Genetic cluster
GC1006

Show all thresholds

PrefixThresholdMatching isolates
0_0_19_7_0_081
0_0_19_7_0_0_041
0_0_19_7_0_0_0_021
0_0_19_7_0_0_0_0_011
0_0_19_7_0_0_0_0_0_001
012202380
0_010352162
0_0_19500102
0_0_19_7551
0_0_19_7_0251
0_0_19_7_0_081
0_0_19_7_0_0_041
0_0_19_7_0_0_0_021
0_0_19_7_0_0_0_0_011
0_0_19_7_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental23 (30 isolates)
SL: 32
SublineagecgMLSTSingle-linkage500experimental23 (30 isolates)
SL: 32
Genomic_clustercgMLSTSingle-linkage25experimental182 (1 isolate)

Schemes and loci

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Tools

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