Full information on isolate CIP107506 (id:316)
Projects
Provenance/primary metadata
- id
- 316
- isolate
- CIP107506
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 1995
- city
- Baltik
- country
- Russia
- continent
- Asia
- travel history
- Not documented
- host
- Human
- accession number
- ERS4330778
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 17 updates show details
- date entered
- 2018-02-20
- datestamp
- 2025-07-17
Publication (1)
- Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107
Sequence bin
- method
- Illumina
- contigs
- 52
- total length
- 2,488,114 bp
- max length
- 352,599 bp
- mean length
- 47,849 bp
- N50
- 103,935
- L50
- 7
- N90
- 27,936
- L90
- 25
- N95
- 18,361
- L95
- 30
- %GC
- 53.48
- Ns
- 10
- gaps
- 1
- loci tagged
- 1,392
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_7_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG146
- Genetic cluster
- GC1006
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: