Full information on isolate LSPQ-04228 (id:2916)

Projects

This isolate is a member of the following projects:

C. ramonii and C. ulcerans, Canada
Corynebacterium ramonii and C. ulcerans isolates from Vancouver, Canada. Nanopore R.10.4.1 (autotag). Published in: Lowe et al Emerg Inf Dis, 2025 (https://pubmed.ncbi.nlm.nih.gov/39773277/)
cgMLST C. ulcerans set-up study
Isolates included in the cgMLST study for C. ulcerans and C. ramonii (publicly-available genomes and some isolates from the French NRC)

Provenance/primary metadata

id
2916
isolate
LSPQ-04228
species
C. ramonii
isolation year
2013
country
Canada
continent
North America
travel history
Unknown
host
Human
source
Scar exudate
infection or disease
Cutaneous infection
comments
IonTorrent
accession number
GCA_000988295.1
sender
Chiara Crestani, Pasteur Institute, France
curator
Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
update history
10 updates show details
embargo history
show details
date entered
2022-11-23
datestamp
2024-12-31

Sequence bin

method
Unknown
contigs
23
total length
2,439,377 bp
max length
410,667 bp
mean length
106,060 bp
N50
276,589
L50
4
N90
130,531
L90
9
N95
128,229
L95
10
%GC
53.39
Ns
0
gaps
0
loci tagged
1,256

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium ramonii Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium ramonii 51%
SPECIES Corynebacterium ulcerans Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium ulcerans 17%

Analysis performed: 2025-06-03

Schemes and loci

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