Full information on isolate LSPQ-04228 (id:2916)
Projects
Provenance/primary metadata
- id
- 2916
- isolate
- LSPQ-04228
- species
- C. ramonii
- isolation year
- 2013
- country
- Canada
- continent
- North America
- travel history
- Unknown
- host
- Human
- source
- Scar exudate
- infection or disease
- Cutaneous infection
- comments
- IonTorrent
- accession number
- GCA_000988295.1
- sender
- Chiara Crestani, Pasteur Institute, France
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 10 updates show details
- embargo history
- show details
- date entered
- 2022-11-23
- datestamp
- 2024-12-31
Sequence bin
- method
- Unknown
- contigs
- 23
- total length
- 2,439,377 bp
- max length
- 410,667 bp
- mean length
- 106,060 bp
- N50
- 276,589
- L50
- 4
- N90
- 130,531
- L90
- 9
- N95
- 128,229
- L95
- 10
- %GC
- 53.39
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,256
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Analysis
rMLST species identification
Analysis performed: 2025-06-03
Schemes and loci
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