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Full information on isolate LSPQ-04227 (id:2915)

Projects

This isolate is a member of the following projects:

C. ramonii and C. ulcerans, Canada
Corynebacterium ramonii and C. ulcerans isolates from Vancouver, Canada. Nanopore R.10.4.1 (autotag). Published in: Lowe et al Emerg Inf Dis, 2025 (https://pubmed.ncbi.nlm.nih.gov/39773277/)
cgMLST C. ulcerans set-up study
Isolates included in the cgMLST study for C. ulcerans and C. ramonii (publicly-available genomes and some isolates from the French NRC)

Provenance/primary metadata

id
2915
isolate
LSPQ-04227
species
C. ramonii
isolation year
2004
country
Canada
continent
North America
travel history
Unknown
host
Human
source
Blood
infection or disease
Diphteria-like
comments
IonTorrent
accession number
GCA_000988285.1
sender
Chiara Crestani, Pasteur Institute, France
curator
Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
update history
9 updates show details
embargo history
show details
date entered
2022-11-23
datestamp
2024-12-31

Sequence bin

method
Unknown
contigs
10
total length
2,428,218 bp
max length
691,756 bp
mean length
242,822 bp
N50
543,718
L50
2
N90
165,362
L90
6
N95
165,362
L95
6
%GC
53.39
Ns
0
gaps
0
loci tagged
1,328

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium ramonii Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium ramonii 48%
SPECIES Corynebacterium ulcerans Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium ulcerans 16%

Analysis performed: 2025-06-03

Schemes and loci

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