Full information on isolate DSM43988 (id:28)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_OtherIsolates
- Publicly-available genomes and isolates from the French NRC (2018-2021)
Provenance/primary metadata
- id
- 28
- isolate
- DSM43988
- species
- C. diphtheriae
- biovar
- Gravis
- country
- Unknown
- travel history
- Not documented
- host
- Human
- source
- throat
- accession number
- AUZN00000000
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1106 updates show details
- embargo history
- show details
- date entered
- 2017-02-07
- datestamp
- 2025-07-18
Publication (1)
- Sangal V, Burkovski A, Hunt AC, Edwards B, Blom J, Hoskisson PA (2014). A lack of genetic basis for biovar differentiation in clinically important Corynebacterium diphtheriae from whole genome sequencing. Infect Genet Evol 21:54-7
Sequence bin
- method
- Unknown
- contigs
- 140
- total length
- 2,141,743 bp
- max length
- 94,550 bp
- mean length
- 15,299 bp
- N50
- 30,220
- L50
- 25
- N90
- 7,928
- L90
- 80
- N95
- 5,331
- L95
- 97
- %GC
- 53.32
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,162
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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