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Full information on isolate 4502 (id:276)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
276
isolate
4502
alias
S99
species
C. diphtheriae
biovar
Gravis
isolation year
2006
city
Gomel
country
Belarus
continent
Europe
travel history
Not documented
host
Human
infection or disease
asymptomatic
accession number
GCA_002203705.1
epidemic cluster
cryptic_33
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
19 updates show details
embargo history
show details
date entered
2017-12-20
datestamp
2025-07-18

Publications (2)

  • Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
49
total length
2,404,702 bp
max length
400,591 bp
mean length
49,076 bp
N50
118,572
L50
7
N90
22,316
L90
22
N95
18,758
L95
27
%GC
53.61
Ns
0
gaps
0
loci tagged
1,373

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_197_5_0_2_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL5
Clonal group
ClG10014
Genetic cluster
GC144

Show all thresholds

PrefixThresholdMatching isolates
0_0_197_5_0_281
0_0_197_5_0_2_041
0_0_197_5_0_2_0_021
0_0_197_5_0_2_0_0_011
0_0_197_5_0_2_0_0_0_001
012202242
0_010352024
0_0_19750055
0_0_197_5553
0_0_197_5_0253
0_0_197_5_0_281
0_0_197_5_0_2_041
0_0_197_5_0_2_0_021
0_0_197_5_0_2_0_0_011
0_0_197_5_0_2_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental157 (3 isolates)
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental157 (3 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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