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Full information on isolate 5064 (id:268)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
268
isolate
5064
alias
S75
species
C. diphtheriae
biovar
Gravis
isolation year
2010
city
Gomel
country
Belarus
continent
Europe
travel history
Not documented
host
Human
infection or disease
asymptomatic
accession number
GCA_002203545.1
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
16 updates show details
embargo history
show details
date entered
2017-12-20
datestamp
2025-07-17

Publications (2)

  • Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
56
total length
2,374,267 bp
max length
272,024 bp
mean length
42,398 bp
N50
99,311
L50
8
N90
24,776
L90
27
N95
16,839
L95
33
%GC
53.44
Ns
0
gaps
0
loci tagged
1,396

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_19_3_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL32
Clonal group
ClG10153
Genetic cluster
GC735

Show all thresholds

PrefixThresholdMatching isolates
0_0_19_3_0_081
0_0_19_3_0_0_041
0_0_19_3_0_0_0_021
0_0_19_3_0_0_0_0_011
0_0_19_3_0_0_0_0_0_001
012202380
0_010352162
0_0_19500102
0_0_19_3551
0_0_19_3_0251
0_0_19_3_0_081
0_0_19_3_0_0_041
0_0_19_3_0_0_0_021
0_0_19_3_0_0_0_0_011
0_0_19_3_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental23 (30 isolates)
SL: 32
SublineagecgMLSTSingle-linkage500experimental23 (30 isolates)
SL: 32
Genomic_clustercgMLSTSingle-linkage25experimental172 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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