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Full information on isolate 847 (id:258)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
SL453 study in 2022
See Arcari et al. Microbial Genomics 2023 (IDs 2315 and 2336 were added after publication)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
258
isolate
847
alias
S36
species
C. diphtheriae
biovar
Mitis
isolation year
1997
city
Brest
country
Belarus
continent
Europe
travel history
Not documented
host
Human
source
sore throat
accession number
GCA_002203335.1
epidemic cluster
cryptic_27
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
19 updates show details
date entered
2017-12-20
datestamp
2025-07-18

Publications (2)

  • Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
58
total length
2,489,232 bp
max length
325,445 bp
mean length
42,918 bp
N50
122,889
L50
8
N90
23,197
L90
25
N95
15,566
L95
31
%GC
53.58
Ns
0
gaps
0
loci tagged
1,392

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_165_8_0_1_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL40
Clonal group
ClG40
Genetic cluster
GC60

Show all thresholds

PrefixThresholdMatching isolates
0_0_165_8_0_181
0_0_165_8_0_1_041
0_0_165_8_0_1_0_021
0_0_165_8_0_1_0_0_011
0_0_165_8_0_1_0_0_0_001
012202380
0_010352162
0_0_16550035
0_0_165_85510
0_0_165_8_0258
0_0_165_8_0_181
0_0_165_8_0_1_041
0_0_165_8_0_1_0_021
0_0_165_8_0_1_0_0_011
0_0_165_8_0_1_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
Genomic_clustercgMLSTSingle-linkage25experimental147 (7 isolates)
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
Genomic_clustercgMLSTSingle-linkage25experimental147 (7 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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