Home About Us Contact What's New
Home>Organism>Corynebacterium cgMLST>Isolate information
Help

Full information on isolate 2163 (id:253)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
253
isolate
2163
alias
S131
species
C. diphtheriae
biovar
Gravis
isolation year
2001
city
Minsk
country
Belarus
continent
Europe
travel history
Not documented
host
Human
infection or disease
asymptomatic
accession number
GCA_002203225.1
epidemic cluster
cryptic_34
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
18 updates show details
embargo history
show details
date entered
2017-12-20
datestamp
2025-07-01

Publications (2)

  • Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
42
total length
2,377,466 bp
max length
400,728 bp
mean length
56,607 bp
N50
125,257
L50
6
N90
42,667
L90
17
N95
20,086
L95
22
%GC
53.57
Ns
0
gaps
0
loci tagged
1,366

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_197_2_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL5
Clonal group
ClG10188
Genetic cluster
GC90

Show all thresholds

PrefixThresholdMatching isolates
0_0_197_2_0_081
0_0_197_2_0_0_041
0_0_197_2_0_0_0_021
0_0_197_2_0_0_0_0_011
0_0_197_2_0_0_0_0_0_001
012202380
0_010352162
0_0_19750055
0_0_197_2554
0_0_197_2_0254
0_0_197_2_0_081
0_0_197_2_0_0_041
0_0_197_2_0_0_0_021
0_0_197_2_0_0_0_0_011
0_0_197_2_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental158 (4 isolates)
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental158 (4 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: