Full information on isolate 20191004_DIFT019 (id:2498)
Provenance/primary metadata
- id
- 2498
- isolate
- 20191004_DIFT019
- alias
- DIFT019
- species
- C. ulcerans
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2012
- city
- 4140
- country
- Belgium
- continent
- Europe
- state or locality
- Liège Province
- travel history
- No
- host
- Human
- source
- Skin lesion
- infection or disease
- Lower limb lesion
- comments
- Poor living conditions
- epidemic cluster
- A
- sender
- Helena Martini
- curator
- Helena Martini, Laboratorium Microbiologie, Universitair Ziekenhuis Brussel, Belgium (E-mail: Helena.Martini@uzbrussel.be)
- update history
- 11 updates show details
- embargo history
- show details
- date entered
- 2024-08-02
- datestamp
- 2026-07-09
Sequence bin
- method
- Illumina
- contigs
- 12
- total length
- 2,575,095 bp
- max length
- 654,303 bp
- mean length
- 214,592 bp
- N50
- 639,216
- L50
- 2
- N90
- 206,760
- L90
- 6
- N95
- 137,523
- L95
- 7
- %GC
- 53.35
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,636
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 5 (23 isolates) | CG: 328 |
| Genomic_cluster_ulcerans | cgMLST_ulcerans | Single-linkage | 25 | experimental | 324 (8 isolates) | |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 1 (254 isolates) | SL: 331 |
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 5 (23 isolates) | CG: 328 |
| Genomic_cluster_ulcerans | cgMLST_ulcerans | Single-linkage | 25 | experimental | 324 (8 isolates) | |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 1 (254 isolates) | SL: 331 |
Schemes and loci
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