Full information on isolate FRC1664 (id:2459)
Projects (1)
This isolate is a member of the following project:
Provenance/primary metadata
- id
- 2459
- isolate
- FRC1664
- duplicate number
- 60
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2022
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Senegal
- host
- Human
- source
- Wound
- infection or disease
- Cutaneous
- comments
- Elek weak
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 12 updates show details
- embargo history
- show details
- date entered
- 2022-09-16
- datestamp
- 2026-08-19
Sequence bin
- method
- Unknown
- contigs
- 33
- total length
- 2,476,805 bp
- max length
- 466,232 bp
- mean length
- 75,055 bp
- N50
- 356,416
- L50
- 3
- N90
- 35,853
- L90
- 14
- N95
- 22,581
- L95
- 18
- %GC
- 53.63
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,363
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_97_2_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL183
- Clonal group
- ClG549
- Genetic cluster
- GC215
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 68 (28 isolates) | SL: 486 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 806 (2 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 68 (28 isolates) | SL: 486 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 806 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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