Full information on isolate FRC1633 (id:2439)
Projects (1)
This isolate is a member of the following project:
Provenance/primary metadata
- id
- 2439
- isolate
- FRC1633
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- Mayotte
- continent
- Africa
- state or locality
- Mayotte
- travel history
- None
- host
- Human
- source
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 9 updates show details
- embargo history
- show details
- date entered
- 2022-09-12
- datestamp
- 2026-09-01
Sequence bin
- method
- Unknown
- contigs
- 40
- total length
- 2,392,757 bp
- max length
- 403,651 bp
- mean length
- 59,819 bp
- N50
- 97,917
- L50
- 6
- N90
- 45,022
- L90
- 20
- N95
- 30,087
- L95
- 23
- %GC
- 53.54
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,310
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_1_0_0_2_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_1
- Sublineage
- SL88
- Clonal group
- ClG853
- Genetic cluster
- GC492
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Analysis:
Export: