Full information on isolate 4288 (id:243)
Projects
Provenance/primary metadata
- id
- 243
- isolate
- 4288
- alias
- S97
- species
- C. diphtheriae
- biovar
- Mitis
- isolation year
- 2006
- city
- Minsk
- country
- Belarus
- continent
- Europe
- travel history
- Not documented
- host
- Human
- infection or disease
- diphtheria
- accession number
- GCA_002203015.1
- epidemic cluster
- cryptic_29
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 19 updates show details
- embargo history
- show details
- date entered
- 2017-12-20
- datestamp
- 2025-07-18
Publications (2)
- Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 45
- total length
- 2,398,714 bp
- max length
- 345,368 bp
- mean length
- 53,305 bp
- N50
- 110,048
- L50
- 8
- N90
- 44,746
- L90
- 22
- N95
- 22,045
- L95
- 26
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,372
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_9_1_3_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG5
- Genetic cluster
- GC23
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 24 (53 isolates) | SL: 5 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 150 (17 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 24 (53 isolates) | SL: 5 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 150 (17 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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