Full information on isolate FRC1607 (id:2429)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 2429
- isolate
- FRC1607
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Somalia
- host
- Human
- source
- Cutaneous
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 8 updates show details
- embargo history
- show details
- date entered
- 2022-09-12
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 30
- total length
- 2,427,540 bp
- max length
- 436,023 bp
- mean length
- 80,918 bp
- N50
- 152,511
- L50
- 5
- N90
- 37,040
- L90
- 14
- N95
- 27,391
- L95
- 17
- %GC
- 53.39
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,301
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_58_0_2_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL503
- Clonal group
- ClG503
- Genetic cluster
- GC806
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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