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Full information on isolate FIXT-966 (id:2396)

Provenance/primary metadata

id
2396
isolate
FIXT-966
species
C. ramonii
biovar
Unknown
tox gene PCR
Negative
isolation year
2017
country
Finland
continent
Europe
travel history
None
host
Animal
source
Lung
infection or disease
Pneumonia
sender
Thomas Grönthal, Finnish Food Authority
curator
Auto Tagger
update history
7 updates show details
date entered
2022-08-01
datestamp
2023-11-16

Sequence bin

method
Illumina
contigs
5
total length
2,457,301 bp
max length
1,219,603 bp
mean length
491,461 bp
N50
788,664
L50
2
N90
443,069
L90
3
N95
443,069
L95
3
%GC
53.36
Ns
0
gaps
0
loci tagged
1,592

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium ramonii Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium ramonii 72%
SPECIES Corynebacterium ulcerans Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium ulcerans 3%

Analysis performed: 2024-01-25

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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