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Full information on isolate FIXT-963 (id:2395)

Provenance/primary metadata

id
2395
isolate
FIXT-963
species
C. ramonii
biovar
Unknown
tox gene PCR
Negative
isolation year
2021
country
Finland
continent
Europe
travel history
None
host
Animal
source
Skin
infection or disease
Skin infection
sender
Thomas Grönthal, Finnish Food Authority
curator
Auto Tagger
update history
7 updates show details
date entered
2022-08-01
datestamp
2023-11-16

Sequence bin

method
Illumina
contigs
7
total length
2,439,507 bp
max length
819,030 bp
mean length
348,501 bp
N50
798,699
L50
2
N90
378,430
L90
4
N95
378,430
L95
4
%GC
53.38
Ns
0
gaps
0
loci tagged
1,590

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium ramonii Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium ramonii 63%
SPECIES Corynebacterium ulcerans Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium ulcerans 11%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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