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Full information on isolate NML180219 (id:2360)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id: 2360
isolate: NML180219
species: C. diphtheriae
biovar: Mitis
isolation year: 2018
country: Canada
continent: North America
travel history: Not documented
host: Human
source: Scalp lesion
accession number: PRJNA798684
sender: Mélanie Hennart, Institut Pasteur, France
curator: Auto Tagger
update history: 8 updates show details
date entered: 2022-07-29
datestamp: 2025-07-28

Sequence bin

method: Illumina
contigs: 23
total length: 2,389,700 bp
max length: 567,685 bp
mean length: 103,900 bp
N50: 229,675
L50: 4
N90: 40,886
L90: 14
N95: 30,148
L95: 17
%GC: 53.61
Ns: 0
gaps: 0
loci tagged: 1,304

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme: cgMLST
LIN code: 0_0_192_1_0_13_1_0_0_0
Species: C. diphtheriae
Lineage: 0_0
Sublineage: SL50
Clonal group: ClG50
Genetic cluster: GC11

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Prefix	Threshold	Matching isolates
0_0_192_1_0_13	8	4
0_0_192_1_0_13_1	4	2
0_0_192_1_0_13_1_0	2	1
0_0_192_1_0_13_1_0_0	1	1
0_0_192_1_0_13_1_0_0_0	0	1
0	1220	2380
0_0	1035	2162
0_0_192	500	84
0_0_192_1	55	72
0_0_192_1_0	25	32
0_0_192_1_0_13	8	4
0_0_192_1_0_13_1	4	2
0_0_192_1_0_13_1_0	2	1
0_0_192_1_0_13_1_0_0	1	1
0_0_192_1_0_13_1_0_0_0	0	1

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	18 (74 isolates)	SL: 50
Genomic_cluster	cgMLST	Single-linkage	25	experimental	629 (28 isolates)
Sublineage	cgMLST	Single-linkage	500	experimental	18 (74 isolates)	SL: 50
Genomic_cluster	cgMLST	Single-linkage	25	experimental	629 (28 isolates)

Schemes and loci

All loci
- Classical schemes
- Other schemes
  - PBP
  - spuA_island
  - tox

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Tools

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