Full information on isolate NML181115 (id:2354)
Projects (2)
This isolate is a member of the following projects:
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
DelgadoBlas_LINcodes_2025 public
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.
1,665 isolates
Provenance/primary metadata
- id
- 2354
- isolate
- NML181115
- species
- C. diphtheriae
- biovar
- Mitis
- isolation year
- 2018
- country
- Canada
- continent
- North America
- travel history
- Not documented
- host
- Human
- source
- throat
- accession number
- PRJNA798684
- sender
- Mélanie Hennart, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 8 updates show details
- date entered
- 2022-07-29
- datestamp
- 2026-07-22
Sequence bin
- method
- Illumina
- contigs
- 23
- total length
- 2,392,435 bp
- max length
- 331,914 bp
- mean length
- 104,019 bp
- N50
- 182,499
- L50
- 5
- N90
- 45,990
- L90
- 14
- N95
- 40,312
- L95
- 16
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,303
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_192_1_1_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL50
- Clonal group
- ClG50
- Genetic cluster
- GC22
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 18 (74 isolates) | SL: 50 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 779 (19 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 18 (74 isolates) | SL: 50 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 779 (19 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Analysis:
Export: