Full information on isolate NML190572 (id:2348)
Projects
Provenance/primary metadata
- id
- 2348
- isolate
- NML190572
- species
- C. diphtheriae
- isolation year
- 2019
- country
- Canada
- continent
- North America
- travel history
- Not documented
- host
- Human
- source
- throat
- accession number
- PRJNA798684
- sender
- Mélanie Hennart, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2022-07-29
- datestamp
- 2025-07-18
Sequence bin
- method
- Illumina
- contigs
- 24
- total length
- 2,389,789 bp
- max length
- 567,976 bp
- mean length
- 99,575 bp
- N50
- 229,643
- L50
- 4
- N90
- 40,886
- L90
- 15
- N95
- 30,149
- L95
- 18
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,303
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_192_1_1_1_1_2_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL50
- Clonal group
- ClG50
- Genetic cluster
- GC22
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 18 (74 isolates) | SL: 50 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 779 (19 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 18 (74 isolates) | SL: 50 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 779 (19 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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