Full information on isolate PC0693 (id:2315)
Projects
Provenance/primary metadata
- id
- 2315
- isolate
- PC0693
- alias
- CD1005
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2017
- country
- Bangladesh
- continent
- Asia
- travel history
- Displaced Myanmar national
- host
- Not documented
- source
- throat swab
- infection or disease
- respiratory diphtheria
- accession number
- CP040526
- sender
- Michael Weigand, US Centers for Disease Control and Prevention
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2022-06-24
- datestamp
- 2025-07-18
- outbreak or sporadic
- outbreak
Sequence bin
- method
- Illumina + PacBio hybrid
- contigs
- 1
- length
- 2,474,408 bp
- %GC
- 53.55
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,312
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_165_2_0_2_0_0_1_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL40
- Clonal group
- ClG453
- Genetic cluster
- GC42
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 21 (34 isolates) | SL: 453 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 21 (10 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 21 (34 isolates) | SL: 453 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 21 (10 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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