Full information on isolate FRC1575 (id:2308)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 2308
- isolate
- FRC1575
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- French Guiana
- continent
- South America
- state or locality
- French Guiana
- travel history
- Not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- embargo history
- show details
- date entered
- 2022-06-23
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 36
- total length
- 2,524,314 bp
- max length
- 424,677 bp
- mean length
- 70,120 bp
- N50
- 162,128
- L50
- 5
- N90
- 44,594
- L90
- 17
- N95
- 31,648
- L95
- 20
- %GC
- 53.64
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,279
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_227_2_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL579
- Clonal group
- ClG832
- Genetic cluster
- GC113
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 246 (10 isolates) | SL: 579 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 768 (3 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 246 (10 isolates) | SL: 579 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 768 (3 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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