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Full information on isolate 5085 (id:230)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
230
isolate
5085
alias
S77
species
C. diphtheriae
biovar
Mitis
isolation year
2010
city
Mogilev
country
Belarus
continent
Europe
travel history
Not documented
host
Human
source
sore throat
accession number
GCA_002202755.1
epidemic cluster
cryptic_29
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
19 updates show details
embargo history
show details
date entered
2017-12-20
datestamp
2025-07-18

Publications (2)

  • Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
41
total length
2,397,464 bp
max length
205,756 bp
mean length
58,475 bp
N50
116,799
L50
9
N90
45,362
L90
20
N95
30,137
L95
23
%GC
53.61
Ns
0
gaps
0
loci tagged
1,370

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_197_9_1_7_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL5
Clonal group
ClG5
Genetic cluster
GC23

Show all thresholds

PrefixThresholdMatching isolates
0_0_197_9_1_781
0_0_197_9_1_7_041
0_0_197_9_1_7_0_021
0_0_197_9_1_7_0_0_011
0_0_197_9_1_7_0_0_0_001
012202380
0_010352162
0_0_19750055
0_0_197_95534
0_0_197_9_12519
0_0_197_9_1_781
0_0_197_9_1_7_041
0_0_197_9_1_7_0_021
0_0_197_9_1_7_0_0_011
0_0_197_9_1_7_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental150 (17 isolates)
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental150 (17 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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