Full information on isolate FRC1512 (id:2299)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 2299
- isolate
- FRC1512
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- None
- host
- Human
- source
- Cutaneous
- infection or disease
- Wound
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 6 updates show details
- embargo history
- show details
- date entered
- 2022-06-23
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 45
- total length
- 2,387,632 bp
- max length
- 346,025 bp
- mean length
- 53,059 bp
- N50
- 117,414
- L50
- 8
- N90
- 44,812
- L90
- 20
- N95
- 36,513
- L95
- 23
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,284
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_13_0_1_0_0_1_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG831
- Genetic cluster
- GC44
| Prefix | Threshold | Matching isolates |
|---|---|---|
| 0_0_197_13_0_1 | 8 | 1 |
| 0_0_197_13_0_1_0 | 4 | 1 |
| 0_0_197_13_0_1_0_0 | 2 | 1 |
| 0_0_197_13_0_1_0_0_1 | 1 | 1 |
| 0_0_197_13_0_1_0_0_1_0 | 0 | 1 |
| 0 | 1220 | 2380 |
| 0_0 | 1035 | 2162 |
| 0_0_197 | 500 | 55 |
| 0_0_197_13 | 55 | 1 |
| 0_0_197_13_0 | 25 | 1 |
| 0_0_197_13_0_1 | 8 | 1 |
| 0_0_197_13_0_1_0 | 4 | 1 |
| 0_0_197_13_0_1_0_0 | 2 | 1 |
| 0_0_197_13_0_1_0_0_1 | 1 | 1 |
| 0_0_197_13_0_1_0_0_1_0 | 0 | 1 |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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