Full information on isolate FRC1483 (id:2293)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 2293
- isolate
- FRC1483
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Madagascar
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 6 updates show details
- embargo history
- show details
- date entered
- 2022-06-23
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 50
- total length
- 2,436,894 bp
- max length
- 296,872 bp
- mean length
- 48,738 bp
- N50
- 125,399
- L50
- 7
- N90
- 31,416
- L90
- 21
- N95
- 21,583
- L95
- 25
- %GC
- 53.53
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,300
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_109_0_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL827
- Clonal group
- ClG827
- Genetic cluster
- GC619
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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Analysis: