Full information on isolate FRC1462 (id:2287)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 2287
- isolate
- FRC1462
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2022
- country
- Mayotte
- continent
- Africa
- state or locality
- Mayotte
- travel history
- Not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 8 updates show details
- embargo history
- show details
- date entered
- 2022-06-23
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 35
- total length
- 2,429,112 bp
- max length
- 302,261 bp
- mean length
- 69,404 bp
- N50
- 135,804
- L50
- 7
- N90
- 62,765
- L90
- 16
- N95
- 34,712
- L95
- 19
- %GC
- 53.55
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,292
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_142_0_0_0_3_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL824
- Clonal group
- ClG824
- Genetic cluster
- GC24
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 342 (10 isolates) | SL: 824 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 756 (10 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 342 (10 isolates) | SL: 824 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 756 (10 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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